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1

Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

Norman, Jason M., Handley, Scott A., Baldridge, Megan T., Droit, Lindsay, Liu, Catherine Y., Keller, Brian C., Kambal, Amal, Monaco, Cynthia L., Zhao, Guoyan, Fleshner, Phillip, Stappenbeck, Thaddeus

Journal:

Year:

2015

Language:

english

File:

PDF, 2.64 MB

english, 2015

2

The carbon isotope stratigraphy of the PETM—New records from bacterial and higher plant biomarkers

L. Handley, E. Hawkins, D. Steart, M. Collinson, A.C. Scott, E. Crouch, J.S. Sinninghe Damstè, R.D. Pancost

Journal:

Geochimica et Cosmochimica Acta

Year:

2006

Language:

english

File:

PDF, 36 KB

english, 2006

3

Increased versican content is associated with tendinosis pathology in the patellar tendon of athletes with jumper's knee

A. Scott, Ø. Lian, C. R. Roberts, J. L. Cook, C. J. Handley, R. Bahr, T. Samiric, M. Z. Ilic, J. Parkinson, D. A. Hart, V. Duronio, K. M. Khan

Journal:

Scandinavian Journal of Medicine & Science in Sports

Year:

2008

Language:

english

File:

PDF, 1009 KB

english, 2008

4

Drowning in Viruses

Handley, Scott A., Virgin, Herbert W.

Journal:

Year:

2019

Language:

english

File:

PDF, 527 KB

english, 2019

5

Estimation of the elastic stiffness coefficient c13 of fixed tendon and fixed myocardium

Hoffmeister, Brent K., Handley, Scott M., Verdonk, Edward D., Wickline, Samuel A., Miller, James G.

Journal:

The Journal of the Acoustical Society of America

Year:

1995

Language:

english

File:

PDF, 866 KB

english, 1995

6

Ultrasonic determination of the anisotropy of Young’s modulus of fixed tendon and fixed myocardium

Hoffmeister, Brent K., Handley, Scott M., Wickline, Samuel A., Miller, James G.

Journal:

The Journal of the Acoustical Society of America

Year:

1996

Language:

english

File:

PDF, 183 KB

english, 1996

7

A Secreted Viral Nonstructural Protein Determines Intestinal Norovirus Pathogenesis

Lee, Sanghyun, Liu, Hejun, Wilen, Craig B., Sychev, Zoi E., Desai, Chandni, Hykes, Barry L., Orchard, Robert C., McCune, Broc T., Kim, Ki-Wook, Nice, Timothy J., Handley, Scott A., Baldridge, Megan T.

Journal:

Cell Host & Microbe

Year:

2019

Language:

english

File:

PDF, 3.81 MB

english, 2019

8

Comparing Bootstrap and Posterior Probability Values in the Four-Taxon Case

Cummings, Michael P., Handley, Scott A., Myers, Daniel S., Reed, David L., Rokas, Antonis, Winka, Katarina

Journal:

Systematic Biology

Year:

2003

Language:

english

File:

PDF, 449 KB

english, 2003

9

Predicting Surgical Intervention for Airway Obstruction in Micrognathic Infants

Handley, S. C., Mader, N. S., Sidman, J. D., Scott, A. R.

Journal:

Otolaryngology - Head and Neck Surgery

Year:

2013

Language:

english

File:

PDF, 234 KB

english, 2013

10

Discussion on “The present state of direct current design as influenced by interpoles”

Ussing, F.E., Ellis, A.G., Glendenning, S.E., Pohl, R., Robson, W.E., Scott, W.H., Handley Page, F.

Journal:

Journal of the Institution of Electrical Engineers

Year:

1907

Language:

english

File:

PDF, 1.25 MB

english, 1907

11

The virome: a missing component of biological interaction networks in health and disease

Handley, Scott A.

Journal:

Genome Medicine

Year:

2016

Language:

english

File:

PDF, 367 KB

english, 2016

12

Changes in Cognitive Function Following Bariatric Surgery: a Systematic Review

Handley, Joel D., Williams, David M., Caplin, Scott, Stephens, Jeffrey W., Barry, Jonathan

Journal:

Obesity Surgery

Year:

2016

Language:

english

File:

PDF, 373 KB

english, 2016

13

Going Viral: a Novel Role for Bacteriophage in Colorectal Cancer

Handley, Scott A., Devkota, Suzanne

Journal:

Year:

2019

File:

PDF, 142 KB

2019

14

Regionalization of Care and the Maternal-Infant Dyad Disconnect

Handley, Sara C., Srinivas, Sindhu K., Lorch, Scott A.

Journal:

Year:

2019

Language:

english

File:

PDF, 52 KB

english, 2019

15

8 ROLE OF THE HOST IMMUNE RESPONSE TO ENTERIC PROKARYOTIC VIRUSES IN INFLAMMATORY BOWEL DISEASE

Angkeow, Julia, Monaco, Daniel, Handley, Scott, Larman, H B

Journal:

Inflammatory Bowel Diseases

Year:

2020

File:

PDF, 289 KB

2020

16

Sex effects in the association between airway microbiome and asthma

Chen, Renjin, Wang, Leran, Koch, Tammy, Curtis, Vanessa, Yin-DeClue, Huiqing, Handley, Scott A., Shan, Liang, Holtzman, Michael J., Castro, Mario, Wang, Leyao

Journal:

Annals of Allergy, Asthma & Immunology

Year:

2020

File:

PDF, 1.92 MB

2020

17

Therapeutic and prophylactic drugs to treat orthopoxvirus infections

Parker, Scott, Handley, Lauren, Buller, R Mark

Journal:

Future Virology

Year:

2008

Language:

english

File:

PDF, 1.45 MB

english, 2008

18

SPIE Proceedings [SPIE International Symposium on Optical Science and Technology - Seattle, WA (Sunday 7 July 2002)] Electro-Optical System Design, Simulation, Testing, and Training - Virtual prototyping with Data Modeling

Jaenisch, Holger M., Handley, James W., White, Kent H., Watson, Jr., James W., Case, Carl T., Songy, Claude G., Wasserman, Richard M., DeVore, Scott L.

Year:

2002

Language:

english

File:

PDF, 221 KB

english, 2002

19

Growth velocity in children with Environmental Enteric Dysfunction is associated with specific bacterial and viral taxa of the gastrointestinal tract in Malawian children

Desai, Chandni, Handley, Scott A., Rodgers, Rachel, Rodriguez, Cynthia, Ordiz, Maria I., Manary, Mark J., Holtz, Lori R., Melby, Peter C.

Journal:

PLoS Neglected Tropical Diseases

Year:

2020

File:

PDF, 2.92 MB

2020

20

Aging produces marked viscoelastic alterations in viable myocardium

Francis C. Ngo, Scott Handley, John Allen, Mark McLean, Samuel Wickline

Journal:

Journal of the American College of Cardiology

Year:

2002

Language:

english

File:

PDF, 135 KB

english, 2002

21

Combinatorial Modulation of Protein Prenylation

Krzysiak, Amanda J., Rawat, Diwan S., Scott, Sarah A., Pais, June E., Handley, Misty, Harrison, Marietta L., Fierke, Carol A., Gibbs, Richard A.

Journal:

ACS Chemical Biology

Year:

2007

Language:

english

File:

PDF, 311 KB

english, 2007

22

Virome biogeography in the lower gastrointestinal tract of rhesus macaques with chronic diarrhea

Zhao, Guoyan, Droit, Lindsay, Gilbert, Margaret H., Schiro, Faith R., Didier, Peter J., Si, Xuemei, Paredes, Anne, Handley, Scott A., Virgin, Herbert W., Bohm, Rudolf P., Wang, David

Journal:

Year:

2019

Language:

english

File:

PDF, 3.07 MB

english, 2019

23

Survey of preterm neuro-centric care practices in California neonatal intensive care units

Handley, Sara C., Passarella, Molly, Lorch, Scott A., Lee, Henry C.

Journal:

Journal of Perinatology

Year:

2018

Language:

english

File:

PDF, 608 KB

english, 2018

24

Cobalt(II) and manganese(II) complexes of unsymmetric compartmental ligands bearing adjacent {N2O} and {N,S,O} donor sets

Harry Adams, Scott Clunas, David E. Fenton, Gillian Handley, Paul E. McHugh

Journal:

Inorganic Chemistry Communications

Year:

2002

Language:

english

File:

PDF, 152 KB

english, 2002

25

[ACM Press the 2001 conference - San Diego, California, United States (2001..-..)] Proceedings of the 2001 conference on Applications, technologies, architectures, and protocols for computer communications - SIGCOMM '01 - A scalable content-addressable network

Ratnasamy, Sylvia, Francis, Paul, Handley, Mark, Karp, Richard, Schenker, Scott

Year:

2001

Language:

english

File:

PDF, 152 KB

english, 2001

26

Effects of Tissue Anisotropy and Contrast Acoustic Properties on Myocardial Scattering in Contrast Echocardiography

Holland, Mark R., Finch-Johnston, Ann E., Wallace, Kirk D., Handley, Scott M., Wilkenshoff, Ursula M., Pérez, Julio E., Miller, James G.

Journal:

Journal of the American Society of Echocardiography

Year:

1999

Language:

english

File:

PDF, 342 KB

english, 1999

27

A hot-filament discharge with very low electron temperature

Handley, Ward, Robertson, Scott

Journal:

Physics of Plasmas

Year:

2009

Language:

english

File:

PDF, 466 KB

english, 2009

28

Comparing Bootstrap and Posterior Probability Values in the Four-Taxon Case

Michael P. Cummings, Scott A. Handley, Daniel S. Myers, David L. Reed, Antonis Rokas and Katarina Winka

Journal:

Systematic Biology

Year:

2003

Language:

english

File:

PDF, 2.29 MB

english, 2003

29

Comparison of integrated backscatter values obtained with acoustic densitometry with values derived from spectral analysis of digitized signals from a clinical imaging system

Holland, Mark R., Hall, Christopher S., Lewis, Stephen H., Handley, Scott M., Finch-Johnston, Ann E., D'Sa, Alwyn P., Perez, Julio E., Miller, James G.

Journal:

Journal of the American Society of Echocardiography

Year:

1997

Language:

english

File:

PDF, 613 KB

english, 1997

30

Comparing Bootstrap and Posterior Probability Values in the Four-Taxon Case

Cummings, Michael P., Handley, Scott A., Myers, Daniel S., Reed, David L., Rokas, Antonis, Winka, Katarina

Journal:

Systematic Biology

Year:

2003

Language:

english

File:

PDF, 449 KB

english, 2003

31

Apyrase (Nucleoside Triphosphate-Diphosphohydrolase) and Extracellular Nucleotides Regulate Cotton Fiber Elongation in Cultured Ovules

Greg Clark, Jonathan Torres, Scott Finlayson, Xueying Guan, Craig Handley, Jinsuk Lee, Julia E. Kays, Z. Jeffery Chen and Stanley J. Roux

Journal:

PLANT PHYSIOLOGY

Year:

2010

Language:

english

File:

PDF, 2.42 MB

english, 2010

32

Discordant transmission of bacteria and viruses from mothers to babies at birth

Maqsood, Rabia, Rodgers, Rachel, Rodriguez, Cynthia, Handley, Scott A., Ndao, I. Malick, Tarr, Phillip I., Warner, Barbara B., Lim, Efrem S., Holtz, Lori R.

Journal:

Year:

2019

File:

PDF, 1.13 MB

2019

33

[ACM Press the 2005 conference - Philadelphia, Pennsylvania, USA (2005.08.22-2005.08.26)] Proceedings of the 2005 conference on Applications, technologies, architectures, and protocols for computer communications - SIGCOMM '05 - HLP

Subramanian, Lakshminarayanan, Caesar, Matthew, Ee, Cheng Tien, Handley, Mark, Mao, Morley, Shenker, Scott, Stoica, Ion

Year:

2005

Language:

english

File:

PDF, 460 KB

english, 2005

34

SIV Infection-Mediated Changes in Gastrointestinal Bacterial Microbiome and Virome Are Associated with Immunodeficiency and Prevented by Vaccination

Handley, Scott A., Desai, Chandni, Zhao, Guoyan, Droit, Lindsay, Monaco, Cynthia L., Schroeder, Andrew C., Nkolola, Joseph P., Norman, Megan E., Miller, Andrew D., Wang, David, Barouch, Dan H., Virgin

Journal:

Cell Host & Microbe

Year:

2016

Language:

english

File:

PDF, 2.29 MB

english, 2016

35

Lactobacillus-Deficient Cervicovaginal Bacterial Communities Are Associated with Increased HIV Acquisition in Young South African Women

Gosmann, Christina, Anahtar, Melis N., Handley, Scott A., Farcasanu, Mara, Abu-Ali, Galeb, Bowman, Brittany A., Padavattan, Nikita, Desai, Chandni, Droit, Lindsay, Moodley, Amber, Dong, Mary, Chen, Yu

Journal:

Year:

2017

Language:

english

File:

PDF, 1.76 MB

english, 2017

36

Pathogenic Simian Immunodeficiency Virus Infection Is Associated with Expansion of the Enteric Virome

Scott A. Handley, Larissa B. Thackray, Guoyan Zhao, Rachel Presti, Andrew D. Miller, Lindsay Droit, Peter Abbink, Lori F. Maxfield, Amal Kambal, Erning Duan, Kelly Stanley, Joshua Kramer, Sheila C. Ma

Journal:

Year:

2012

Language:

english

File:

PDF, 2.93 MB

english, 2012

37

The new ACAM2000™ vaccine and other therapies to control orthopoxvirus outbreaks and bioterror attacks

Handley, Lauren, Buller, Robert Mark, Frey, Sharon E, Bellone, Clifford, Parker, Scott

Journal:

Expert Review of Vaccines

Year:

2009

Language:

english

File:

PDF, 281 KB

english, 2009

38

Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome

Monaco, Cynthia L., Gootenberg, David B., Zhao, Guoyan, Handley, Scott A., Ghebremichael, Musie S., Lim, Efrem S., Lankowski, Alex, Baldridge, Megan T., Wilen, Craig B., Flagg, Meaghan, Norman, Jason

Journal:

Cell Host & Microbe

Year:

2016

Language:

english

File:

PDF, 2.23 MB

english, 2016

39

Longitudinal analysis of microbial interaction between humans and the indoor environment

Lax, S., Smith, D. P., Hampton-Marcell, J., Owens, S. M., Handley, K. M., Scott, N. M., Gibbons, S. M., Larsen, P., Shogan, B. D., Weiss, S., Metcalf, J. L., Ursell, L. K., Vazquez-Baeza, Y., Van Treu

Journal:

Year:

2014

Language:

english

File:

PDF, 709 KB

english, 2014

40

Population Health Management

Boden, Scott D., Smith, Brian T., Handley, Matthew

Journal:

The Journal of Bone & Joint Surgery

Year:

2017

Language:

english

File:

PDF, 507 KB

english, 2017

41

Biological Actions of Formoterol Isomers

Dean A. Handley, Chris H. Senanayake, William Dutczak, Jeffrey L. Benovic, Thomas Walle, Raymond B. Penn, H.Scott Wilkinson, Gerald J. Tanoury, Rolf G.G. Andersson, Fredrik Johansson, John Morley

Journal:

Pulmonary Pharmacology & Therapeutics

Year:

2002

Language:

english

File:

PDF, 130 KB

english, 2002

42

Kingdom-Agnostic Metagenomics and the Importance of Complete Characterization of Enteric Microbial Communities

Norman, Jason M., Handley, Scott A., Virgin, Herbert W.

Journal:

Gastroenterology

Year:

2014

Language:

english

File:

PDF, 954 KB

english, 2014

43

The Intestinal Microbiome Restricts Alphavirus Infection and Dissemination through a Bile Acid-Type I IFN Signaling Axis

Winkler, Emma S., Shrihari, Swathi, Hykes, Barry L., Handley, Scott A., Andhey, Prabhakar S., Huang, Yan-Jang S., Swain, Amanda, Droit, Lindsay, Chebrolu, Kranthi K., Mack, Matthias, Vanlandingham, Da

Journal:

Year:

2020

File:

PDF, 9.53 MB

2020

44

General and specific host responses to bacterial infection in Peyer's patches: a role for stromelysin-1 (matrix metalloproteinase-3) during Salmonella enterica infection

Scott A. Handley, Virginia L. Miller

Journal:

Molecular Microbiology

Year:

2007

Language:

english

File:

PDF, 1.06 MB

english, 2007

45

Alterations in the oral microbiome in HIV-infected participants after ART administration are influenced by immune status

Presti, Rachel M., Handley, Scott, Droit, Lindsay, Ghannoum, Mahmoud, Jacobson, Mark, Shiboski, Caroline H., Webster-Cyriaque, Jennifer, Brown, Todd, Yin, Michael T., Overton, Edgar T.

Journal:

Year:

2018

Language:

english

File:

PDF, 485 KB

english, 2018

46

A method for the compensation of the effects of surface cloth impressions on polar backscatter applied to porous epoxy and biaxial graphite/epoxy composites

Madaras, E.I., Lori Bridal, S., Holland, Mark R., Handley, Scott M., Miller, J.G.

Journal:

NDT & E International

Year:

1992

Language:

english

File:

PDF, 286 KB

english, 1992

47

Effect of Antibiotic-Mediated Microbiome Modulation on Rotavirus Vaccine Immunogenicity: A Human, Randomized-Control Proof-of-Concept Trial

Harris, Vanessa C., Haak, Bastiaan W., Handley, Scott A., Jiang, Baoming, Velasquez, Daniel E., Hykes, Barry L., Droit, Lindsay, Berbers, Guy A.M., Kemper, Elles Marleen, van Leeuwen, Ester M.M., Boel

Journal:

Cell Host & Microbe

Year:

2018

Language:

english

File:

PDF, 2.75 MB

english, 2018

48

Postharvest water stress of an early maturing plum

Scott Johnson, R., Handley, D. F., Day, K. R.

Journal:

Journal of Horticultural Science

Year:

1994

Language:

english

File:

PDF, 739 KB

english, 1994

49

A scalable content-addressable network

Ratnasamy, Sylvia, Francis, Paul, Handley, Mark, Karp, Richard, Schenker, Scott

Journal:

ACM SIGCOMM Computer Communication Review

Year:

2001

Language:

english

File:

PDF, 152 KB

english, 2001

50

Expanded Enteric Virome and Altered Bacterial Microbiome in AIDS

Monaco, Cynthia, Gootenberg, David, Zhao, Guoyan, Lim, Efrem, Ghebremichael, Musie, Baldridge, Megan, Wilen, Craig, Handley, Scott, Flagg, Meaghan, Siedner, Mark, Norman, Jason, Keller, Brian, Lankows

Journal:

Open Forum Infectious Diseases

Year:

2015

Language:

english

File:

PDF, 29 KB

english, 2015

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